I've been re-watching some episodes, and I've noticed that some episodes have tough layouts, but no one says anything about them. Two off the top of my head are the Lion-Slashed Jacket of Sacagawea, and the Royal Torque of Queen Boadicea.
In the Lion-Slashed Jacket, this team had to scale the central shaft, then complete the top floor of the temple. Compare this to runs like The Jeweled Scabbard of Sforza, where the team only had to complete the central shaft, or like the Applewood Amulet of Emilliano Zapato, where the team only had to clear the top floor of the temple.
In the Royal Torque of Queen Boadicea, the layout forced the team into the Scared Markers, then up in to the King's Storeroom. Compare this to other bottom central shaft runs like The Good Luck Watch, or the Electrified Key where the team only had to complete 1 Central Shaft room, and the Shrine-Forest path was open.
Feel free to post any other runs that you feel aren't recognized for their hard layouts